Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs72764253 chr1:232262897 T/G 5.81E-13 119 42.82 38.33 3.97 KM Plot
THYM rs72764254 chr1:232266485 G/T 5.81E-13 119 42.82 38.33 3.97 KM Plot
THYM rs72764925 chr10:1535705 T/C 0.000185 117 38.33 42.9 25.83 KM Plot
THYM rs72764928 chr10:1537960 T/C 0.000185 117 38.33 42.9 25.83 KM Plot
THYM rs72764938 chr10:1546849 G/T 0.00015 119 38.33 45.87 25.83 KM Plot
THYM rs72764939 chr10:1548522 G/T 0.000176 117 38.33 45.87 25.83 KM Plot
THYM rs72764942 chr10:1550417 C/T 0.000176 117 38.33 45.87 25.83 KM Plot
THYM rs72764946 chr10:1553252 A/C 0.000176 117 38.33 45.87 25.83 KM Plot
THYM rs7276709 chr21:45461444 G/C 0.000107 119 38.58 50.65 28.43 KM Plot
THYM rs72783146 chr2:36950554 G/A 0.000263 118 41.77 32.33 17.6 KM Plot
THYM rs72807315 chr16:56691157 C/T 0 114 42.73 40.97 4.13 KM Plot
THYM rs72809352 chr10:90742624 A/G 1.65E-12 115 40.67 38.13 6 KM Plot
THYM rs72853154 chr2:30666530 C/G 1.1E-6 115 38.58 44.38 13.23 KM Plot
THYM rs72854380 chr17:73475893 G/C 0.000145 116 38.23 41.77 50.1 KM Plot
THYM rs72854808 chr11:11812621 A/T 0.000177 118 40.67 42.9 13.35 KM Plot